Variant report

Variant	rs4545475
Chromosome Location	chr10:112648765-112648766
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112647774..112649360-chr10:112651685..112653252,2	K562	blood:
2	chr10:112631001..112634625-chr10:112648231..112651298,3	MCF-7	breast:
3	chr10:112647836..112649681-chr10:112677265..112679020,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150593	Chromatin interaction
ENSG00000214413	Chromatin interaction
ENSG00000203497	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10509932	0.84[EUR][1000 genomes]
rs1052550	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10732804	0.89[EUR][1000 genomes]
rs10749055	0.89[EUR][1000 genomes]
rs10749056	0.89[EUR][1000 genomes]
rs10787296	0.89[EUR][1000 genomes]
rs1571240	0.84[EUR][1000 genomes]
rs17128095	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17128168	0.89[EUR][1000 genomes]
rs17128194	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2273934	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3750620	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs44336	0.84[EUR][1000 genomes]
rs4918615	0.84[EUR][1000 genomes]
rs6585021	0.96[ASN][1000 genomes]
rs6585028	0.89[EUR][1000 genomes]
rs7913363	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	nsv1035602	chr10:112636053-112781413	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112632800-112678000	Weak transcription	Lung	lung
2	chr10:112632800-112678200	Weak transcription	Spleen	Spleen
3	chr10:112633200-112656000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:112633200-112656800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:112633400-112662000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:112633600-112653800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr10:112633600-112655200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr10:112633800-112659800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr10:112634000-112649400	Weak transcription	Brain Hippocampus Middle	brain
10	chr10:112634000-112655000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:112634000-112655800	Weak transcription	Psoas Muscle	Psoas
12	chr10:112634000-112656000	Weak transcription	Right Ventricle	heart
13	chr10:112634000-112662400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr10:112634200-112655800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:112634600-112656600	Weak transcription	NHEK	skin
16	chr10:112634800-112661800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr10:112634800-112677400	Weak transcription	HUVEC	blood vessel
18	chr10:112635400-112657000	Strong transcription	HSMM	muscle
19	chr10:112635400-112661800	Strong transcription	Placenta	Placenta
20	chr10:112635600-112660600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:112635600-112662200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:112635600-112663400	Strong transcription	Primary monocytes fromperipheralblood	blood
23	chr10:112635800-112662200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:112636000-112652000	Strong transcription	Fetal Intestine Large	intestine
25	chr10:112636000-112664400	Strong transcription	Fetal Thymus	thymus
26	chr10:112636200-112656200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:112636400-112664800	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr10:112637400-112656200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:112637600-112651000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr10:112638200-112650600	Strong transcription	Adipose Nuclei	Adipose
31	chr10:112639200-112661000	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:112641800-112655200	Weak transcription	Brain Angular Gyrus	brain
33	chr10:112642200-112655000	Weak transcription	Aorta	Aorta
34	chr10:112643000-112667200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr10:112643400-112649400	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr10:112643600-112650400	Strong transcription	Fetal Kidney	kidney
37	chr10:112644000-112653200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:112644000-112655000	Weak transcription	Small Intestine	intestine
39	chr10:112644000-112664000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:112644200-112650600	Weak transcription	Fetal Stomach	stomach
41	chr10:112644200-112651200	Weak transcription	NHLF	lung
42	chr10:112644200-112653200	Strong transcription	Duodenum Smooth Muscle	Duodenum
43	chr10:112644200-112653200	Weak transcription	Fetal Heart	heart
44	chr10:112644200-112655000	Weak transcription	Stomach Smooth Muscle	stomach
45	chr10:112644200-112655200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr10:112644200-112656600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr10:112644200-112656800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:112644200-112656800	Weak transcription	Gastric	stomach
49	chr10:112644200-112663200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr10:112644200-112664400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links