Variant report

Variant	rs7913363
Chromosome Location	chr10:112617664-112617665
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:112598132..112600634-chr10:112617601..112619746,2	MCF-7	breast:
2	chr10:112603838..112606492-chr10:112617289..112618833,2	MCF-7	breast:
3	chr10:112608440..112622028-chr10:112627331..112635995,26	MCF-7	breast:
4	chr10:112616118..112618633-chr10:112678657..112680477,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214413	Chromatin interaction
ENSG00000232470	Chromatin interaction
ENSG00000203497	Chromatin interaction
ENSG00000108061	Chromatin interaction
ENSG00000150593	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10509932	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1052550	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10732804	0.86[EUR][1000 genomes]
rs10749055	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10749056	1.00[CEU][hapmap];0.82[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10787287	0.86[CHB][hapmap]
rs10787296	0.86[EUR][1000 genomes]
rs1571240	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128095	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17128168	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17128194	1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs2273934	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3750620	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs44336	0.82[EUR][1000 genomes]
rs4545475	0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4917592	0.82[ASW][hapmap]
rs4918615	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6585021	0.85[CHB][hapmap];0.94[CHD][hapmap];0.89[GIH][hapmap]
rs6585023	1.00[CHB][hapmap];0.89[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6585028	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045608	chr10:112524813-112677557	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1041758	chr10:112552897-112677557	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv896003	chr10:112579299-112631211	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv896002	chr10:112579299-112638028	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1051566	chr10:112580049-112730573	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112602400-112620600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:112611200-112619600	Weak transcription	Osteobl	bone
3	chr10:112611200-112630600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:112612400-112618000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:112612600-112619000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr10:112612600-112619200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr10:112614800-112624400	Weak transcription	Aorta	Aorta
8	chr10:112617000-112617800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr10:112617000-112617800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:112617000-112617800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:112617000-112617800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr10:112617000-112617800	Enhancers	Fetal Muscle Trunk	muscle
13	chr10:112617000-112617800	Enhancers	Gastric	stomach
14	chr10:112617000-112617800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:112617000-112617800	Enhancers	NHLF	lung
16	chr10:112617000-112618000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
17	chr10:112617000-112618000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:112617000-112618000	Enhancers	Left Ventricle	heart
19	chr10:112617000-112618000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
20	chr10:112617000-112618000	Flanking Active TSS	HepG2	liver
21	chr10:112617000-112618000	Enhancers	NHDF-Ad	bronchial
22	chr10:112617000-112618200	Flanking Active TSS	GM12878-XiMat	blood
23	chr10:112617000-112618200	Flanking Active TSS	Hela-S3	cervix
24	chr10:112617000-112618400	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr10:112617000-112618400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr10:112617000-112618400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr10:112617000-112618600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:112617000-112618600	Enhancers	NHEK	skin
29	chr10:112617000-112618800	Enhancers	Placenta Amnion	Placenta Amnion
30	chr10:112617000-112619200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr10:112617000-112619400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr10:112617000-112619400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr10:112617000-112619600	Enhancers	Lung	lung
34	chr10:112617000-112620200	Enhancers	Primary T helper cells PMA-I stimulated	--
35	chr10:112617000-112620400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:112617000-112620600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr10:112617000-112620600	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr10:112617000-112620600	Enhancers	Fetal Lung	lung
39	chr10:112617000-112621000	Enhancers	Brain Cingulate Gyrus	brain
40	chr10:112617000-112621000	Enhancers	Right Atrium	heart
41	chr10:112617000-112621200	Enhancers	Adipose Nuclei	Adipose
42	chr10:112617000-112621200	Enhancers	Liver	Liver
43	chr10:112617000-112621200	Enhancers	Esophagus	oesophagus
44	chr10:112617000-112621200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr10:112617000-112621200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr10:112617000-112621200	Enhancers	Stomach Mucosa	stomach
47	chr10:112617000-112621200	Enhancers	Spleen	Spleen
48	chr10:112617000-112621400	Enhancers	Fetal Intestine Small	intestine
49	chr10:112617000-112621400	Enhancers	Fetal Muscle Leg	muscle
50	chr10:112617000-112622000	Enhancers	Primary B cells from cord blood	blood

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