Variant report

Variant	rs10732804
Chromosome Location	chr10:112795021-112795022
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10509932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1052550	0.89[EUR][1000 genomes]
rs10749055	1.00[EUR][1000 genomes]
rs10749056	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10749057	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs10787296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1571240	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17128095	0.89[EUR][1000 genomes]
rs17128168	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17128194	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[TSI][hapmap];0.89[EUR][1000 genomes]
rs1980869	0.87[GIH][hapmap]
rs2273934	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[EUR][1000 genomes]
rs3750620	0.89[EUR][1000 genomes]
rs44336	0.95[EUR][1000 genomes]
rs4545475	0.89[EUR][1000 genomes]
rs4917592	0.82[ASW][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap]
rs4918615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4918616	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6585021	1.00[CHD][hapmap]
rs6585023	0.94[CHD][hapmap];1.00[JPT][hapmap]
rs6585028	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7101351	0.81[AFR][1000 genomes]
rs7913363	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831985	chr10:112652089-112803103	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1042020	chr10:112686323-112795159	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1048444	chr10:112724159-112795159	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv498045	chr10:112794518-113353550	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:112770800-112798800	Weak transcription	HMEC	breast
2	chr10:112783400-112801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:112792800-112800400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:112793000-112795800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:112794200-112795400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:112794200-112795400	Enhancers	NHDF-Ad	bronchial
7	chr10:112794200-112795600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:112794200-112795600	Enhancers	Osteobl	bone
9	chr10:112794200-112795800	Enhancers	HSMM	muscle
10	chr10:112794200-112795800	Enhancers	NH-A	brain
11	chr10:112794400-112795200	Enhancers	NHLF	lung
12	chr10:112794400-112795800	Enhancers	HSMMtube	muscle
13	chr10:112794800-112795200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr10:112795000-112795200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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