Variant report

Variant	rs2485140
Chromosome Location	chr6:75340459-75340460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1856031	0.88[EUR][1000 genomes]
rs2485130	0.89[EUR][1000 genomes]
rs2485131	0.87[EUR][1000 genomes]
rs2485141	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2785683	0.85[CHB][hapmap];0.93[YRI][hapmap]
rs2785685	0.81[CHB][hapmap];0.93[YRI][hapmap]
rs488669	0.88[EUR][1000 genomes]
rs494670	0.88[EUR][1000 genomes]
rs549296	0.88[EUR][1000 genomes]
rs570642	0.84[EUR][1000 genomes]
rs575176	0.88[EUR][1000 genomes]
rs575276	0.88[EUR][1000 genomes]
rs576973	0.88[EUR][1000 genomes]
rs577037	0.85[EUR][1000 genomes]
rs693667	0.88[EUR][1000 genomes]
rs9360827	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2485140	SCHIP1	trans	lymphoblastoid	seeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75340200-75342400	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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