Variant report

Variant	rs9360827
Chromosome Location	chr6:75312267-75312268
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:75304642..75307016-chr6:75311511..75314002,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272243	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1041658	0.81[EUR][1000 genomes]
rs10434815	0.85[EUR][1000 genomes]
rs12662758	0.81[EUR][1000 genomes]
rs1318620	0.92[EUR][1000 genomes]
rs1334508	0.85[EUR][1000 genomes]
rs1537951	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1855568	0.96[EUR][1000 genomes]
rs2502498	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2781831	0.86[EUR][1000 genomes]
rs2781832	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2785671	0.81[EUR][1000 genomes]
rs2785682	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2785683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2785685	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2785686	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4349776	0.85[EUR][1000 genomes]
rs473061	0.96[EUR][1000 genomes]
rs475854	0.96[EUR][1000 genomes]
rs475924	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs488583	0.96[EUR][1000 genomes]
rs490353	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs490721	0.89[EUR][1000 genomes]
rs493138	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs498111	0.81[EUR][1000 genomes]
rs502220	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs508557	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs512609	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517112	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs517712	0.81[EUR][1000 genomes]
rs524179	0.96[EUR][1000 genomes]
rs527379	0.81[EUR][1000 genomes]
rs531195	0.81[EUR][1000 genomes]
rs551041	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs564969	0.96[EUR][1000 genomes]
rs567525	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs575612	0.81[EUR][1000 genomes]
rs6904268	0.85[EUR][1000 genomes]
rs6910123	0.85[EUR][1000 genomes]
rs6912037	0.92[EUR][1000 genomes]
rs7756702	0.81[EUR][1000 genomes]
rs9341476	0.88[EUR][1000 genomes]
rs9341482	0.85[EUR][1000 genomes]
rs9341483	0.85[EUR][1000 genomes]
rs9343176	0.88[EUR][1000 genomes]
rs9343184	0.85[EUR][1000 genomes]
rs9350554	0.88[EUR][1000 genomes]
rs9352141	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9359092	0.84[EUR][1000 genomes]
rs9360807	0.85[EUR][1000 genomes]
rs9360809	0.85[EUR][1000 genomes]
rs9360810	0.85[EUR][1000 genomes]
rs9360811	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75307000-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:75307400-75312800	Weak transcription	NHDF-Ad	bronchial
4	chr6:75307600-75313000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:75308600-75313200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:75309000-75313000	Weak transcription	Osteobl	bone
7	chr6:75309400-75312800	Weak transcription	A549	lung
8	chr6:75309600-75313000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:75309600-75313200	Weak transcription	Hela-S3	cervix
10	chr6:75310800-75313600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:75310800-75314400	Weak transcription	Stomach Mucosa	stomach
12	chr6:75311200-75316000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:75311600-75313000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:75312000-75312400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:75312000-75313400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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