Variant report

Variant	rs490721
Chromosome Location	chr6:75297920-75297921
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1041657	0.86[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1167371	0.86[CHB][hapmap];0.86[JPT][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1177511	0.86[ASN][1000 genomes]
rs1318620	0.82[EUR][1000 genomes]
rs1537951	0.89[EUR][1000 genomes]
rs1855568	0.93[EUR][1000 genomes]
rs2502498	0.93[EUR][1000 genomes]
rs2781831	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2781832	0.89[EUR][1000 genomes]
rs2785682	0.86[EUR][1000 genomes]
rs2785683	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs2785684	0.86[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.87[LWK][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2785685	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs2785686	0.93[EUR][1000 genomes]
rs2992983	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs473061	0.93[EUR][1000 genomes]
rs475854	0.93[EUR][1000 genomes]
rs475924	0.93[EUR][1000 genomes]
rs488583	0.93[EUR][1000 genomes]
rs490353	0.93[EUR][1000 genomes]
rs493138	0.86[EUR][1000 genomes]
rs494683	0.84[JPT][hapmap];0.86[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs502220	0.93[EUR][1000 genomes]
rs508557	0.93[EUR][1000 genomes]
rs512609	0.93[EUR][1000 genomes]
rs517112	0.89[EUR][1000 genomes]
rs524179	0.93[EUR][1000 genomes]
rs551041	0.93[EUR][1000 genomes]
rs564969	0.93[EUR][1000 genomes]
rs567525	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs6912037	0.82[EUR][1000 genomes]
rs9352141	0.89[EUR][1000 genomes]
rs9360827	0.85[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75296000-75298000	Weak transcription	Hela-S3	cervix
2	chr6:75296200-75298000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75297200-75298000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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