Variant report

Variant	rs493138
Chromosome Location	chr6:75288283-75288284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1318620	0.82[EUR][1000 genomes]
rs1537951	0.89[EUR][1000 genomes]
rs1855568	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2502498	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781831	0.83[EUR][1000 genomes]
rs2781832	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785682	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2785683	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785685	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785686	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs473061	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475854	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475924	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488583	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs490353	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490721	0.86[EUR][1000 genomes]
rs502220	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs508557	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs512609	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs517112	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs524179	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs551041	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs564969	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs567525	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6912037	0.82[EUR][1000 genomes]
rs9352141	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360827	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75284600-75289000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:75286800-75288600	Enhancers	GM12878-XiMat	blood
3	chr6:75286800-75289200	Enhancers	NHDF-Ad	bronchial
4	chr6:75286800-75290000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:75286800-75290000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:75287200-75288400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:75287200-75288600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:75287200-75289200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:75287200-75289200	Enhancers	Osteobl	bone
10	chr6:75287200-75289400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:75287200-75289400	Enhancers	Hela-S3	cervix
12	chr6:75287200-75289400	Enhancers	NHLF	lung
13	chr6:75287200-75289600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:75287200-75289800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:75287400-75288800	Enhancers	HSMM	muscle
16	chr6:75287400-75289200	Enhancers	NH-A	brain
17	chr6:75287400-75289800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:75287600-75288800	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:75288000-75288400	Enhancers	HSMMtube	muscle
20	chr6:75288000-75288600	Enhancers	A549	lung
21	chr6:75288200-75289400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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