Variant report

Variant	rs502220
Chromosome Location	chr6:75284633-75284634
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:74679584..74680329-chr6:75284218..75285177,4	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1041658	0.85[EUR][1000 genomes]
rs10434815	0.81[EUR][1000 genomes]
rs1318620	0.89[EUR][1000 genomes]
rs1334508	0.81[EUR][1000 genomes]
rs1537951	0.96[EUR][1000 genomes]
rs1855568	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2502498	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2781831	0.90[EUR][1000 genomes]
rs2781832	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785671	0.85[EUR][1000 genomes]
rs2785682	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2785683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785685	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2785686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4349776	0.81[EUR][1000 genomes]
rs473061	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475854	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs475924	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs488583	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs490353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs490721	0.93[EUR][1000 genomes]
rs493138	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs498111	0.85[EUR][1000 genomes]
rs508557	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs512609	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs517112	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs517712	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs524179	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs527379	0.85[EUR][1000 genomes]
rs531195	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs551041	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs564969	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs567525	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs575612	0.85[EUR][1000 genomes]
rs6904268	0.81[EUR][1000 genomes]
rs6910123	0.81[EUR][1000 genomes]
rs6912037	0.89[EUR][1000 genomes]
rs7756702	0.85[EUR][1000 genomes]
rs9341476	0.85[EUR][1000 genomes]
rs9341482	0.81[EUR][1000 genomes]
rs9341483	0.81[EUR][1000 genomes]
rs9343176	0.85[EUR][1000 genomes]
rs9343184	0.81[EUR][1000 genomes]
rs9350554	0.85[EUR][1000 genomes]
rs9352141	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9359092	0.81[EUR][1000 genomes]
rs9360807	0.81[EUR][1000 genomes]
rs9360809	0.81[EUR][1000 genomes]
rs9360810	0.81[EUR][1000 genomes]
rs9360811	0.81[EUR][1000 genomes]
rs9360827	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75278800-75287200	Weak transcription	NHLF	lung
2	chr6:75282800-75284800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75283600-75287200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:75284400-75284800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:75284600-75289000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links