Variant report

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1041657	0.87[CHB][hapmap];0.87[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1167371	0.87[CHB][hapmap];0.87[JPT][hapmap];0.85[YRI][hapmap];0.85[ASN][1000 genomes]
rs1177511	0.86[ASN][1000 genomes]
rs1537951	0.93[EUR][1000 genomes]
rs1855568	0.90[EUR][1000 genomes]
rs2502498	0.90[EUR][1000 genomes]
rs2781832	0.93[EUR][1000 genomes]
rs2785682	0.83[EUR][1000 genomes]
rs2785683	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2785684	0.86[CHB][hapmap];0.85[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs2785685	0.85[CEU][hapmap];0.90[EUR][1000 genomes]
rs2785686	0.90[EUR][1000 genomes]
rs2992983	0.88[ASN][1000 genomes]
rs473061	0.90[EUR][1000 genomes]
rs475854	0.90[EUR][1000 genomes]
rs475924	0.90[EUR][1000 genomes]
rs488583	0.90[EUR][1000 genomes]
rs490353	0.90[EUR][1000 genomes]
rs490721	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493138	0.83[EUR][1000 genomes]
rs494683	0.84[JPT][hapmap];0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs502220	0.90[EUR][1000 genomes]
rs508557	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs512609	0.90[EUR][1000 genomes]
rs517112	0.93[EUR][1000 genomes]
rs524179	0.90[EUR][1000 genomes]
rs551041	0.90[EUR][1000 genomes]
rs564969	0.90[EUR][1000 genomes]
rs567525	0.96[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs9352141	0.86[EUR][1000 genomes]
rs9360827	0.85[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75292200-75297200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:75294800-75296200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:75295200-75296000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:75295200-75296000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:75295200-75296000	Enhancers	Hela-S3	cervix
6	chr6:75295200-75296200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:75295400-75296000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:75295400-75296000	Enhancers	NHDF-Ad	bronchial
9	chr6:75295400-75296200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:75295400-75296200	Enhancers	Osteobl	bone

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