Variant report

Variant	rs1167371
Chromosome Location	chr6:75309021-75309022
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1041657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1177511	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1856031	0.85[ASN][1000 genomes]
rs2485130	0.87[ASN][1000 genomes]
rs2485131	0.87[ASN][1000 genomes]
rs2781831	0.85[ASN][1000 genomes]
rs2785684	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2992983	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs488669	0.85[ASN][1000 genomes]
rs490721	0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs494670	0.85[ASN][1000 genomes]
rs494683	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs549296	0.86[ASN][1000 genomes]
rs575176	0.85[ASN][1000 genomes]
rs575276	0.86[ASN][1000 genomes]
rs577037	0.81[ASN][1000 genomes]
rs693667	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520746	chr6:75211546-75691814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917283	chr6:75234428-75641440	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv830694	chr6:75245483-75446282	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:75306400-75309400	Enhancers	HMEC	breast
2	chr6:75306400-75309400	Enhancers	HSMM	muscle
3	chr6:75306400-75309600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:75306800-75309200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:75306800-75309200	Enhancers	NHEK	skin
6	chr6:75307000-75309200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:75307000-75316800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:75307000-75319000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:75307200-75312000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:75307400-75309600	Enhancers	Hela-S3	cervix
11	chr6:75307400-75312800	Weak transcription	NHDF-Ad	bronchial
12	chr6:75307600-75313000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:75308000-75309400	Flanking Active TSS	GM12878-XiMat	blood
14	chr6:75308400-75310600	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr6:75308600-75313200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:75309000-75309400	Enhancers	A549	lung
17	chr6:75309000-75313000	Weak transcription	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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