Variant report

Variant	rs2489564
Chromosome Location	chr10:26954984-26954985
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:26954305..26956450-chr10:26987430..26988975,2	K562	blood:
2	chr10:26948657..26951534-chr10:26954538..26957242,4	K562	blood:
3	chr10:26953025..26955897-chr10:26956336..26959208,3	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10128125	0.81[ASN][1000 genomes]
rs10128192	0.81[ASN][1000 genomes]
rs10829048	0.81[ASN][1000 genomes]
rs11015220	0.81[ASN][1000 genomes]
rs11015226	0.81[ASN][1000 genomes]
rs11015230	0.81[ASN][1000 genomes]
rs11816510	0.98[ASN][1000 genomes]
rs11818450	0.98[ASN][1000 genomes]
rs12242239	0.81[ASN][1000 genomes]
rs12242414	0.81[ASN][1000 genomes]
rs12245051	0.81[ASN][1000 genomes]
rs12246285	0.81[ASN][1000 genomes]
rs12247299	0.81[ASN][1000 genomes]
rs12247597	0.81[ASN][1000 genomes]
rs12255583	0.81[ASN][1000 genomes]
rs12255942	0.81[ASN][1000 genomes]
rs12260035	0.81[ASN][1000 genomes]
rs12260298	0.81[ASN][1000 genomes]
rs12262082	0.81[ASN][1000 genomes]
rs12262401	0.81[ASN][1000 genomes]
rs12263262	0.81[ASN][1000 genomes]
rs12263578	0.81[ASN][1000 genomes]
rs12264509	0.81[ASN][1000 genomes]
rs12265633	0.81[ASN][1000 genomes]
rs12265746	0.81[ASN][1000 genomes]
rs12267744	0.81[ASN][1000 genomes]
rs12269520	0.84[ASN][1000 genomes]
rs17754039	0.81[ASN][1000 genomes]
rs17754051	0.81[ASN][1000 genomes]
rs1980754	0.81[ASN][1000 genomes]
rs2005120	0.86[ASN][1000 genomes]
rs2477276	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2489559	0.95[EUR][1000 genomes]
rs2489562	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34314417	0.84[ASN][1000 genomes]
rs34901510	0.81[ASN][1000 genomes]
rs35534478	0.81[ASN][1000 genomes]
rs35687107	0.81[ASN][1000 genomes]
rs35827769	0.81[ASN][1000 genomes]
rs4309054	0.81[ASN][1000 genomes]
rs72485013	0.86[ASN][1000 genomes]
rs72485015	0.81[ASN][1000 genomes]
rs72485017	0.81[ASN][1000 genomes]
rs72485018	0.81[ASN][1000 genomes]
rs72485022	0.81[ASN][1000 genomes]
rs72485023	0.81[ASN][1000 genomes]
rs72485026	0.81[ASN][1000 genomes]
rs753705	0.86[ASN][1000 genomes]
rs7899631	0.81[ASN][1000 genomes]
rs7900674	0.81[ASN][1000 genomes]
rs7906473	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3436664	chr10:26860755-26969397	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv894977	chr10:26876272-26959202	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1044848	chr10:26890410-26961634	Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1052412	chr10:26890945-26961634	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1041766	chr10:26890945-26969381	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1046911	chr10:26894348-26969381	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1044057	chr10:26894348-26971879	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv516275	chr10:26896432-26968171	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	esv3333006	chr10:26908323-26985227	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv3353004	chr10:26912762-26966282	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
12	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
13	nsv947778	chr10:26944706-26958639	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26954400-26955000	Transcr. at gene 5' and 3'	K562	blood
2	chr10:26954800-26955000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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