Variant report

Variant	rs12260298
Chromosome Location	chr10:26965270-26965271
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:26964246-26965274	SK-N-MC	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26965218..26966801-chr10:26966890..26969574,2	K562	blood:
2	chr10:26965108..26970102-chr10:26984839..26987979,6	K562	blood:

Variant related genes	Relation type
ENSG00000227932	TF binding region
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10128125	1.00[ASN][1000 genomes]
rs10128192	1.00[ASN][1000 genomes]
rs10829047	0.89[EUR][1000 genomes]
rs10829048	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015209	0.86[EUR][1000 genomes]
rs11015211	0.88[EUR][1000 genomes]
rs11015212	0.88[EUR][1000 genomes]
rs11015216	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015218	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11015220	1.00[ASN][1000 genomes]
rs11015226	1.00[ASN][1000 genomes]
rs11015230	0.96[ASN][1000 genomes]
rs11015233	0.86[ASN][1000 genomes]
rs11015234	0.86[ASN][1000 genomes]
rs11816510	0.83[ASN][1000 genomes]
rs11818450	0.83[ASN][1000 genomes]
rs12242239	1.00[ASN][1000 genomes]
rs12242414	1.00[ASN][1000 genomes]
rs12245051	0.96[ASN][1000 genomes]
rs12246285	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12247299	1.00[ASN][1000 genomes]
rs12247597	1.00[ASN][1000 genomes]
rs12252298	0.98[ASN][1000 genomes]
rs12252358	0.98[ASN][1000 genomes]
rs12252368	0.98[ASN][1000 genomes]
rs12255583	1.00[ASN][1000 genomes]
rs12255942	1.00[ASN][1000 genomes]
rs12260035	1.00[ASN][1000 genomes]
rs12260466	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12262082	1.00[ASN][1000 genomes]
rs12262401	1.00[ASN][1000 genomes]
rs12263262	1.00[ASN][1000 genomes]
rs12263578	1.00[ASN][1000 genomes]
rs12264509	1.00[ASN][1000 genomes]
rs12265505	0.82[ASN][1000 genomes]
rs12265633	1.00[ASN][1000 genomes]
rs12265746	1.00[ASN][1000 genomes]
rs12267744	1.00[ASN][1000 genomes]
rs12268883	0.98[ASN][1000 genomes]
rs12269520	0.92[ASN][1000 genomes]
rs12761447	0.96[EUR][1000 genomes]
rs17754039	0.96[ASN][1000 genomes]
rs17754051	0.96[ASN][1000 genomes]
rs1980754	1.00[ASN][1000 genomes]
rs2005120	0.94[ASN][1000 genomes]
rs2477276	0.81[ASN][1000 genomes]
rs2489564	0.81[ASN][1000 genomes]
rs34314417	0.96[ASN][1000 genomes]
rs34814552	0.86[EUR][1000 genomes]
rs34901510	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35534478	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687107	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35827769	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35841691	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs36006550	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4309054	1.00[ASN][1000 genomes]
rs61841662	0.94[EUR][1000 genomes]
rs7097696	0.84[ASN][1000 genomes]
rs72485013	0.94[ASN][1000 genomes]
rs72485015	1.00[ASN][1000 genomes]
rs72485017	1.00[ASN][1000 genomes]
rs72485018	1.00[ASN][1000 genomes]
rs72485022	1.00[ASN][1000 genomes]
rs72485023	0.96[ASN][1000 genomes]
rs72485026	0.96[ASN][1000 genomes]
rs753705	0.94[ASN][1000 genomes]
rs7896300	0.89[EUR][1000 genomes]
rs7899631	1.00[ASN][1000 genomes]
rs7900674	1.00[ASN][1000 genomes]
rs7902245	0.88[EUR][1000 genomes]
rs7905561	0.88[EUR][1000 genomes]
rs7906473	1.00[ASN][1000 genomes]
rs7920279	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv3436664	chr10:26860755-26969397	Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1041766	chr10:26890945-26969381	Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1046911	chr10:26894348-26969381	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1044057	chr10:26894348-26971879	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv516275	chr10:26896432-26968171	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv3333006	chr10:26908323-26985227	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	esv3353004	chr10:26912762-26966282	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26963400-26969400	Weak transcription	Thymus	Thymus
2	chr10:26965200-26965600	Enhancers	Fetal Thymus	thymus
3	chr10:26965200-26966600	Weak transcription	K562	blood

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