Variant report

Variant	rs249535
Chromosome Location	chr5:35097682-35097683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:35093395..35095961-chr5:35096148..35098601,3	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10447126	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10447127	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10447139	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10447140	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13158610	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13168861	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13168862	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13173198	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs13177387	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs13181487	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs13182158	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13182164	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs13182801	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1966571	0.81[CHB][hapmap]
rs2069478	1.00[GIH][hapmap]
rs249525	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249526	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249527	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs249528	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249529	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249530	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249531	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249532	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs249534	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs249538	0.81[CHB][hapmap]
rs2962091	0.82[AFR][1000 genomes]
rs34219486	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34236258	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35143774	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35245967	0.82[AFR][1000 genomes]
rs35248131	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35322400	0.87[ASN][1000 genomes]
rs35655493	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4703390	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4703391	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4703499	0.86[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4703500	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.99[ASN][1000 genomes]
rs4703501	1.00[CHB][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs55648130	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs55868369	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56059407	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72734543	1.00[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9687437	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35088800-35114000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr5:35089800-35113800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr5:35092800-35100800	Weak transcription	Placenta	Placenta
4	chr5:35093600-35104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr5:35093800-35103200	Weak transcription	Fetal Intestine Large	intestine
6	chr5:35094600-35098200	Enhancers	Pancreas	Pancrea
7	chr5:35096400-35098200	Weak transcription	HepG2	liver
8	chr5:35096600-35114400	Weak transcription	Stomach Mucosa	stomach
9	chr5:35097400-35099200	Enhancers	Liver	Liver
10	chr5:35097400-35100400	Strong transcription	Fetal Intestine Small	intestine

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