Variant report

Variant	rs249538
Chromosome Location	chr5:35089400-35089401
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10447139	0.82[CHB][hapmap]
rs10447140	0.81[CHB][hapmap]
rs249529	0.82[CHB][hapmap]
rs249531	0.82[CHB][hapmap]
rs249534	0.81[CHB][hapmap]
rs249535	0.81[CHB][hapmap]
rs249536	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs249537	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[ASN][1000 genomes]
rs37382	0.87[CEU][hapmap];0.80[ASN][1000 genomes]
rs37383	0.87[CEU][hapmap];0.80[ASN][1000 genomes]
rs37384	0.81[ASN][1000 genomes]
rs37385	0.87[CEU][hapmap];0.84[CHB][hapmap];0.81[ASN][1000 genomes]
rs37386	0.81[ASN][1000 genomes]
rs388541	0.87[CEU][hapmap];0.80[ASN][1000 genomes]
rs40530	0.95[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs413319	0.98[ASN][1000 genomes]
rs4703390	0.81[CHB][hapmap]
rs4703499	0.81[CHB][hapmap]
rs4703500	0.82[CHB][hapmap]
rs4703501	0.82[CHB][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35061600-35096000	Weak transcription	Gastric	stomach
2	chr5:35062600-35091600	Weak transcription	Colonic Mucosa	Colon
3	chr5:35063800-35089600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr5:35064200-35091600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:35066400-35094600	Weak transcription	HepG2	liver
6	chr5:35080200-35093000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr5:35080800-35089600	Strong transcription	Placenta	Placenta
8	chr5:35081400-35089800	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:35082400-35089800	Strong transcription	Fetal Intestine Large	intestine
10	chr5:35083600-35091600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr5:35083600-35094600	Weak transcription	Pancreas	Pancrea
12	chr5:35085400-35091400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr5:35086000-35089600	Weak transcription	Stomach Mucosa	stomach
14	chr5:35087400-35090000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:35087800-35089400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:35087800-35089800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr5:35087800-35089800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr5:35087800-35089800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:35088000-35089800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr5:35088000-35090000	Enhancers	Osteobl	bone
21	chr5:35088000-35090200	Enhancers	Liver	Liver
22	chr5:35088400-35090000	Weak transcription	Fetal Intestine Small	intestine
23	chr5:35088600-35089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr5:35088800-35114000	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr5:35089000-35089600	Active TSS	NHDF-Ad	bronchial
26	chr5:35089200-35089600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr5:35089400-35090000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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