Variant report

Variant	rs388541
Chromosome Location	chr5:35094824-35094825
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1966571	0.88[CHB][hapmap]
rs249536	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs249537	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs249538	0.87[CEU][hapmap];0.80[ASN][1000 genomes]
rs37382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs37384	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37385	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs37386	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs40530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413319	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4790	chr5:35090745-35123632	Enhancers Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35061600-35096000	Weak transcription	Gastric	stomach
2	chr5:35088800-35114000	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr5:35089800-35113800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:35091600-35096600	Enhancers	Stomach Mucosa	stomach
5	chr5:35092600-35096000	Weak transcription	NHDF-Ad	bronchial
6	chr5:35092800-35096200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:35092800-35100800	Weak transcription	Placenta	Placenta
8	chr5:35093600-35095400	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:35093600-35104200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:35093800-35097400	Weak transcription	Fetal Intestine Small	intestine
11	chr5:35093800-35103200	Weak transcription	Fetal Intestine Large	intestine
12	chr5:35094600-35096400	Enhancers	HepG2	liver
13	chr5:35094600-35096600	Enhancers	Liver	Liver
14	chr5:35094600-35097000	Enhancers	Fetal Brain Male	brain
15	chr5:35094600-35098200	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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