Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10763625	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10764728	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10826577	0.81[ASN][1000 genomes]
rs10829279	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829280	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10829313	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11006735	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015939	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11015977	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11015982	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12220519	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12413861	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1844549	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1844550	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1907041	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2451513	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2495823	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2495825	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2495827	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2495845	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4443968	0.81[ASN][1000 genomes]
rs7916006	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv550123	chr10:19090812-19228730	Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv894916	chr10:19095467-19429415	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19146000-19147600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr10:19146200-19149000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr10:19146400-19151000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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