Variant report

Variant	rs2495823
Chromosome Location	chr10:19090128-19090129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10763625	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10764728	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10829279	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10829280	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10829313	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11006735	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11015939	0.94[CEU][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11015977	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11015982	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12220519	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12413861	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1844549	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1844550	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1907041	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2451513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2495825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2495827	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2495842	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2495845	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894915	chr10:18984571-19257664	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv997980	chr10:19088017-19099867	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19085000-19093200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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