Variant report

Variant	rs2496392
Chromosome Location	chr13:39325028-39325029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28502478	0.91[ASN][1000 genomes]
rs71439780	0.83[AMR][1000 genomes]
rs9603414	0.86[EUR][1000 genomes]
rs9603415	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9603422	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39298200-39339600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr13:39310800-39325400	Weak transcription	Fetal Kidney	kidney
3	chr13:39320000-39325400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:39322400-39326800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr13:39322800-39337200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr13:39323200-39327800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr13:39325000-39326000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:39325000-39328400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links