Variant report

Variant	rs9603422
Chromosome Location	chr13:39343822-39343823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2496392	0.81[ASN][1000 genomes]
rs9603415	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832585	chr13:39233307-39424375	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39338000-39345000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:39338000-39365400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr13:39338400-39345000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr13:39338400-39345200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr13:39338600-39351800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:39342000-39351600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr13:39342200-39350200	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr13:39343400-39344000	Active TSS	Osteobl	bone
9	chr13:39343600-39344000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr13:39343600-39346400	Weak transcription	Fetal Heart	heart
11	chr13:39343800-39344000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr13:39343800-39344000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr13:39343800-39344000	Flanking Bivalent TSS/Enh	Hela-S3	cervix

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links