Variant report

Variant	rs2497724
Chromosome Location	chr10:116311390-116311391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:116308927..116312101-chr10:116579635..116582119,3	MCF-7	breast:
2	chr10:116310252..116311787-chr10:116463124..116463956,6	MCF-7	breast:
3	chr10:116309046..116312030-chr10:116580790..116583146,2	MCF-7	breast:
4	chr10:116310031..116311847-chr10:116382346..116385171,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151553	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1333688	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2483534	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2483535	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2483536	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2483537	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2483539	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2483540	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2483541	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2483542	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483543	0.87[ASN][1000 genomes]
rs2483544	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483545	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2483546	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483548	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483550	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483552	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483553	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483554	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483555	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483556	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2483557	0.87[ASN][1000 genomes]
rs2483558	0.87[ASN][1000 genomes]
rs2483559	0.87[ASN][1000 genomes]
rs2497725	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2497726	0.98[ASN][1000 genomes]
rs2497727	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2497728	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2497729	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2497730	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2497731	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2497732	0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2497735	0.87[ASN][1000 genomes]
rs2497736	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2497737	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2497738	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2497739	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2497740	0.86[ASN][1000 genomes]
rs2497741	0.87[ASN][1000 genomes]
rs2497742	0.87[ASN][1000 genomes]
rs2497744	0.87[ASN][1000 genomes]
rs7085345	0.80[AMR][1000 genomes]
rs7091986	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7915116	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7915452	0.86[ASN][1000 genomes]
rs9325544	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3336522	chr10:116310912-116312672	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116298600-116311600	Weak transcription	Gastric	stomach
2	chr10:116305000-116317600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr10:116305200-116316000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:116305200-116318200	Weak transcription	Fetal Intestine Large	intestine
5	chr10:116307600-116313400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr10:116307600-116316000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr10:116307800-116317600	Weak transcription	Fetal Intestine Small	intestine
8	chr10:116308400-116311600	Weak transcription	Thymus	Thymus
9	chr10:116308600-116311400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:116308600-116312600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr10:116308600-116313200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:116308600-116315800	Weak transcription	HepG2	liver
13	chr10:116308800-116313200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr10:116309000-116316400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:116310200-116311600	Enhancers	Fetal Heart	heart
16	chr10:116310400-116311400	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr10:116310400-116311800	Enhancers	Small Intestine	intestine
18	chr10:116310600-116311600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:116310600-116311600	Active TSS	Colonic Mucosa	Colon
20	chr10:116310600-116311600	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr10:116310600-116311600	Enhancers	HSMMtube	muscle
22	chr10:116310600-116311600	Flanking Active TSS	HUVEC	blood vessel
23	chr10:116310600-116312000	Enhancers	Left Ventricle	heart
24	chr10:116310600-116312000	Enhancers	Ovary	ovary
25	chr10:116310600-116313000	Enhancers	Fetal Muscle Leg	muscle
26	chr10:116310800-116311400	Flanking Active TSS	Brain Hippocampus Middle	brain
27	chr10:116310800-116311400	Flanking Active TSS	Rectal Smooth Muscle	rectum
28	chr10:116310800-116311400	Active TSS	Right Atrium	heart
29	chr10:116310800-116311400	Flanking Active TSS	NHLF	lung
30	chr10:116310800-116311600	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr10:116310800-116311600	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr10:116310800-116311600	Genic enhancers	HSMM	muscle
33	chr10:116310800-116311800	Flanking Active TSS	Fetal Lung	lung
34	chr10:116310800-116312000	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr10:116310800-116312000	Enhancers	Fetal Stomach	stomach
36	chr10:116310800-116312000	Enhancers	Fetal Thymus	thymus
37	chr10:116310800-116312000	Enhancers	Pancreas	Pancrea
38	chr10:116310800-116312000	Enhancers	Right Ventricle	heart
39	chr10:116310800-116312400	Enhancers	Psoas Muscle	Psoas
40	chr10:116310800-116312400	Enhancers	Stomach Mucosa	stomach
41	chr10:116310800-116317400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr10:116311000-116311400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:116311000-116311400	Active TSS	Liver	Liver
44	chr10:116311000-116311400	Weak transcription	Esophagus	oesophagus
45	chr10:116311000-116311400	Weak transcription	Lung	lung
46	chr10:116311000-116311600	Weak transcription	Fetal Kidney	kidney
47	chr10:116311000-116311600	Enhancers	NH-A	brain
48	chr10:116311000-116311800	Enhancers	Brain Angular Gyrus	brain
49	chr10:116311000-116311800	Enhancers	Sigmoid Colon	Sigmoid Colon
50	chr10:116311000-116312000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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