Variant report

Variant	rs2497754
Chromosome Location	chr10:18280602-18280603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2437266	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2437273	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2478574	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2497753	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2497755	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2497761	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2497763	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2497764	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2497838	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9418383	1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755188	chr10:17881747-18292594	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv528116	chr10:18278063-18282427	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18273600-18282000	Weak transcription	Hela-S3	cervix
2	chr10:18277800-18283000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:18279800-18282200	Weak transcription	NHLF	lung
4	chr10:18280000-18282000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:18280000-18282200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:18280400-18282000	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links