Variant report

Variant	rs2497764
Chromosome Location	chr10:18294978-18294979
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2437273	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478573	0.87[CEU][hapmap]
rs2478574	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497753	1.00[JPT][hapmap]
rs2497754	0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2497755	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2497756	0.82[EUR][1000 genomes]
rs2497758	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2497761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497763	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9418383	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415320	chr10:18122232-18333356	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1039655	chr10:18252931-18348954	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18293600-18295600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:18293800-18295400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr10:18293800-18295400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr10:18294000-18295600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr10:18294200-18295000	Flanking Active TSS	Osteobl	bone
6	chr10:18294200-18295200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr10:18294200-18295200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:18294200-18295200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:18294200-18295200	Flanking Active TSS	Hela-S3	cervix
10	chr10:18294200-18295400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr10:18294200-18295400	Enhancers	HUVEC	blood vessel
12	chr10:18294200-18295600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:18294200-18295600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr10:18294200-18295600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:18294200-18295600	Enhancers	Fetal Stomach	stomach
16	chr10:18294200-18295600	Enhancers	NHLF	lung
17	chr10:18294200-18296000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:18294400-18295000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:18294400-18295000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:18294400-18295000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr10:18294400-18295000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:18294400-18295000	Enhancers	Brain Substantia Nigra	brain
23	chr10:18294400-18295000	Active TSS	Stomach Smooth Muscle	stomach
24	chr10:18294400-18295200	Enhancers	Fetal Kidney	kidney
25	chr10:18294400-18295400	Enhancers	Brain Germinal Matrix	brain
26	chr10:18294400-18295600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr10:18294400-18295600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr10:18294600-18295000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr10:18294600-18295000	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr10:18294600-18295000	Active TSS	Rectal Smooth Muscle	rectum
31	chr10:18294600-18295400	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr10:18294600-18295600	Enhancers	NHDF-Ad	bronchial
33	chr10:18294600-18296000	Enhancers	H9 Cell Line	embryonic stem cell
34	chr10:18294800-18295000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr10:18294800-18295000	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr10:18294800-18295000	Flanking Active TSS	Fetal Lung	lung
37	chr10:18294800-18295000	Flanking Active TSS	Ovary	ovary
38	chr10:18294800-18295200	Weak transcription	Fetal Muscle Leg	muscle
39	chr10:18294800-18295400	Enhancers	NH-A	brain
40	chr10:18294800-18295600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:18294800-18295600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr10:18294800-18297000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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