Variant report

Variant	rs2504752
Chromosome Location	chr6:71581640-71581641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71578713..71580960-chr6:71581384..71584217,2	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13197338	0.83[JPT][hapmap]
rs13212771	0.83[JPT][hapmap]
rs2038477	0.94[CHB][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.96[MEX][hapmap];0.81[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2460692	0.83[ASW][hapmap];0.89[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2460699	0.84[ASW][hapmap];0.96[CEU][hapmap];0.81[CHB][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.93[LWK][hapmap];0.80[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2474914	0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[EUR][1000 genomes]
rs2474915	0.92[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2474916	0.81[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2474921	0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[MEX][hapmap];0.85[AMR][1000 genomes]
rs2504747	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2504748	0.92[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2504749	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2504750	0.89[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2504751	0.94[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2504753	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3734371	0.94[JPT][hapmap]
rs3734372	0.94[JPT][hapmap]
rs483894	0.81[CHB][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs576516	0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs746121	0.81[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs7760267	0.80[GIH][hapmap]
rs9680	0.89[CHB][hapmap];0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2504752	B3GAT2	cis	cerebellum	SCAN
rs2504752	BAI3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71571600-71584000	Weak transcription	Pancreas	Pancrea

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