Variant report
| Variant | rs2504751 |
|---|---|
| Chromosome Location | chr6:71581740-71581741 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:71578713..71580960-chr6:71581384..71584217,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs13197338 | 0.83[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs13198627 | 0.83[ASN][1000 genomes] |
| rs13202113 | 0.84[ASN][1000 genomes] |
| rs13203355 | 0.85[ASN][1000 genomes] |
| rs13212771 | 0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2038477 | 0.89[CHB][hapmap];0.83[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs2460699 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2474915 | 0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2474921 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2504748 | 0.81[CEU][hapmap];0.94[CHB][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2504749 | 0.80[EUR][1000 genomes] |
| rs2504752 | 0.94[CHB][hapmap];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2504753 | 0.82[AMR][1000 genomes] |
| rs34336229 | 0.84[ASN][1000 genomes] |
| rs9354939 | 0.92[CEU][hapmap];1.00[YRI][hapmap] |
| rs9354940 | 0.82[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs9680 | 0.94[CHB][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv932111 | chr6:70736835-71633094 | Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv917312 | chr6:70961903-71601688 | Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:71571600-71584000 | Weak transcription | Pancreas | Pancrea |
