Variant report

Variant	rs13203355
Chromosome Location	chr6:71541487-71541488
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11752509	0.97[EUR][1000 genomes]
rs13196394	0.90[EUR][1000 genomes]
rs13197338	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13198627	0.93[ASN][1000 genomes]
rs13202113	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13212771	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17763077	0.98[EUR][1000 genomes]
rs2474921	0.94[ASN][1000 genomes]
rs2504751	0.85[ASN][1000 genomes]
rs34336229	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34519120	0.98[EUR][1000 genomes]
rs35293093	0.98[EUR][1000 genomes]
rs68097508	0.84[EUR][1000 genomes]
rs9680	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71474600-71568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:71492400-71563600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:71506800-71570600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr6:71508400-71543800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:71511600-71554600	Weak transcription	Dnd41	blood
6	chr6:71514800-71548400	Weak transcription	Ovary	ovary
7	chr6:71516200-71546200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:71516400-71562200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr6:71516400-71567600	Weak transcription	Pancreas	Pancrea
10	chr6:71516600-71543400	Weak transcription	Adipose Nuclei	Adipose
11	chr6:71516600-71567600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:71518400-71552400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:71522000-71558200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:71524600-71548200	Weak transcription	Psoas Muscle	Psoas
15	chr6:71531200-71543600	Weak transcription	Liver	Liver
16	chr6:71531200-71571000	Weak transcription	Stomach Mucosa	stomach
17	chr6:71532000-71543400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:71532400-71557200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:71533000-71567600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:71533200-71545600	Weak transcription	Primary T cells from cord blood	blood
21	chr6:71533200-71547600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr6:71533200-71548000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr6:71533200-71557000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:71534000-71550200	Weak transcription	Primary B cells from cord blood	blood
25	chr6:71534000-71563200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr6:71534600-71543600	Weak transcription	NHDF-Ad	bronchial
27	chr6:71534800-71546800	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:71534800-71567600	Weak transcription	Aorta	Aorta
29	chr6:71535600-71548200	Weak transcription	Left Ventricle	heart
30	chr6:71537200-71556000	Weak transcription	Right Ventricle	heart
31	chr6:71537600-71574200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr6:71538800-71553200	Weak transcription	Gastric	stomach
33	chr6:71538800-71555400	Weak transcription	Esophagus	oesophagus
34	chr6:71539200-71556000	Weak transcription	Fetal Intestine Small	intestine
35	chr6:71539800-71548200	Weak transcription	Fetal Intestine Large	intestine
36	chr6:71540800-71543600	Weak transcription	HSMMtube	muscle
37	chr6:71541400-71546400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links