Variant report

Variant	rs35293093
Chromosome Location	chr6:71485554-71485555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:71484396..71486845-chr6:71490631..71493457,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11752509	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13196394	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13197338	0.98[EUR][1000 genomes]
rs13198627	0.81[EUR][1000 genomes]
rs13202113	0.99[EUR][1000 genomes]
rs13203355	0.98[EUR][1000 genomes]
rs13212771	0.96[EUR][1000 genomes]
rs17763077	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34336229	0.98[EUR][1000 genomes]
rs34519120	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35528153	0.91[AFR][1000 genomes]
rs67594983	0.91[AFR][1000 genomes]
rs68097508	0.86[EUR][1000 genomes]
rs9354939	0.81[ASN][1000 genomes]
rs9354940	0.95[ASN][1000 genomes]
rs9680	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1027049	chr6:70961610-71561488	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv524328	chr6:70961833-71558805	Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv917312	chr6:70961903-71601688	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71440400-71488800	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr6:71443200-71488800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr6:71444800-71523600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:71447800-71500600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:71451800-71488200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:71451800-71488400	Weak transcription	Pancreas	Pancrea
7	chr6:71453000-71489800	Weak transcription	Psoas Muscle	Psoas
8	chr6:71463200-71492600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:71463400-71488200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:71465800-71488200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr6:71466200-71485800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:71466200-71488400	Weak transcription	Aorta	Aorta
13	chr6:71466400-71487600	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr6:71466400-71493200	Weak transcription	Dnd41	blood
15	chr6:71466400-71494800	Weak transcription	Small Intestine	intestine
16	chr6:71466400-71508800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:71466600-71488600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:71467000-71486200	Weak transcription	Brain Germinal Matrix	brain
19	chr6:71468800-71532200	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr6:71469800-71488400	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:71471200-71490600	Weak transcription	Right Ventricle	heart
22	chr6:71472200-71488400	Weak transcription	Gastric	stomach
23	chr6:71472400-71488400	Weak transcription	Esophagus	oesophagus
24	chr6:71472600-71488400	Weak transcription	Spleen	Spleen
25	chr6:71473000-71515600	Weak transcription	Left Ventricle	heart
26	chr6:71473800-71488200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:71473800-71520200	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr6:71474200-71488200	Weak transcription	HUVEC	blood vessel
29	chr6:71474600-71487400	Weak transcription	Brain Substantia Nigra	brain
30	chr6:71474600-71489000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr6:71474600-71568800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:71474800-71488400	Weak transcription	Primary hematopoietic stem cells	blood
33	chr6:71474800-71493400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:71474800-71515000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:71475000-71487600	Weak transcription	Fetal Thymus	thymus
36	chr6:71475000-71493800	Weak transcription	Adipose Nuclei	Adipose
37	chr6:71475000-71515200	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:71480400-71488800	Weak transcription	Colonic Mucosa	Colon
39	chr6:71481200-71495800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:71481400-71488600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr6:71481800-71486200	Weak transcription	Primary T cells from cord blood	blood
42	chr6:71481800-71487400	Weak transcription	Fetal Intestine Small	intestine
43	chr6:71481800-71488200	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr6:71481800-71488200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:71481800-71488200	Weak transcription	Lung	lung
46	chr6:71481800-71488400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:71481800-71488400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr6:71481800-71488400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr6:71481800-71488400	Weak transcription	Fetal Stomach	stomach
50	chr6:71481800-71488800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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