Variant report

Variant	rs2505305
Chromosome Location	chr10:27796769-27796770
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27778016..27779963-chr10:27794325..27797130,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1886400	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2477315	0.82[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2477317	0.92[CHB][hapmap]
rs2477343	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2642273	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2763300	0.85[EUR][1000 genomes]
rs2763301	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2763308	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2808279	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794000-27801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:27794200-27799400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:27794200-27800200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:27794200-27803800	Weak transcription	Lung	lung
5	chr10:27794200-27806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:27794200-27817000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:27794400-27798200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr10:27794400-27798600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr10:27794400-27798800	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr10:27794400-27799600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr10:27794800-27796800	Enhancers	Left Ventricle	heart
14	chr10:27794800-27799000	Weak transcription	Placenta	Placenta
15	chr10:27794800-27800200	Weak transcription	Fetal Stomach	stomach
16	chr10:27794800-27800800	Weak transcription	Right Ventricle	heart
17	chr10:27794800-27802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr10:27794800-27802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:27794800-27814200	Weak transcription	Ovary	ovary
20	chr10:27794800-27814600	Weak transcription	HSMMtube	muscle
21	chr10:27794800-27822800	Weak transcription	Colonic Mucosa	Colon
22	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
23	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
24	chr10:27795000-27797000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr10:27795000-27797000	Enhancers	Psoas Muscle	Psoas
26	chr10:27795000-27798600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:27795000-27798800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr10:27795000-27798800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr10:27795000-27799000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:27795000-27799200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr10:27795000-27799200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr10:27795000-27800200	Weak transcription	Fetal Intestine Small	intestine
33	chr10:27795000-27800800	Weak transcription	Primary hematopoietic stem cells	blood
34	chr10:27795000-27802800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:27795000-27806000	Weak transcription	Fetal Kidney	kidney
36	chr10:27795000-27813000	Weak transcription	Right Atrium	heart
37	chr10:27795200-27796800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:27795200-27796800	Genic enhancers	Fetal Thymus	thymus
39	chr10:27795200-27796800	Enhancers	Thymus	Thymus
40	chr10:27795200-27798400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:27795200-27799200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr10:27795200-27800400	Weak transcription	A549	lung
43	chr10:27795200-27802400	Weak transcription	Brain Cingulate Gyrus	brain
44	chr10:27795200-27813800	Weak transcription	Fetal Brain Male	brain
45	chr10:27795200-27816800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr10:27795400-27799000	Weak transcription	HSMM	muscle
47	chr10:27795400-27799800	Weak transcription	Osteobl	bone
48	chr10:27795400-27802400	Weak transcription	Fetal Brain Female	brain
49	chr10:27795600-27798000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:27795600-27798200	Weak transcription	NH-A	brain

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