Variant report

Variant	rs2763308
Chromosome Location	chr10:27820742-27820743
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27814281..27821266-chr10:27824273..27827197,8	K562	blood:
2	chr10:27813292..27818525-chr10:27818980..27823484,5	K562	blood:
3	chr10:27817702..27821230-chr10:27827784..27829695,3	MCF-7	breast:
4	chr10:27798609..27800885-chr10:27819164..27820782,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12415979	0.83[YRI][hapmap]
rs1886400	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2477315	0.86[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2477317	0.92[CHB][hapmap];0.97[CHD][hapmap];0.82[ASN][1000 genomes]
rs2477343	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2505305	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2642273	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2642274	0.83[YRI][hapmap]
rs2763300	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2763301	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2808279	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr10:27794800-27822800	Weak transcription	Colonic Mucosa	Colon
4	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
5	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
6	chr10:27795800-27822600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
8	chr10:27800800-27823200	Weak transcription	Brain Anterior Caudate	brain
9	chr10:27801800-27829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr10:27803200-27822600	Weak transcription	NH-A	brain
11	chr10:27803400-27822400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:27803400-27823200	Weak transcription	Fetal Muscle Trunk	muscle
13	chr10:27803400-27823800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:27803400-27830800	Weak transcription	Hela-S3	cervix
15	chr10:27804000-27822600	Weak transcription	Dnd41	blood
16	chr10:27804000-27823000	Weak transcription	Lung	lung
17	chr10:27804000-27823000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:27804000-27823200	Weak transcription	Gastric	stomach
19	chr10:27804000-27823400	Weak transcription	Aorta	Aorta
20	chr10:27804200-27822400	Weak transcription	HMEC	breast
21	chr10:27804200-27822600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr10:27804400-27822800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:27804600-27822600	Weak transcription	Placenta	Placenta
24	chr10:27804600-27823000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr10:27804600-27823000	Weak transcription	Fetal Intestine Large	intestine
26	chr10:27805600-27822800	Weak transcription	Fetal Thymus	thymus
27	chr10:27806000-27823200	Weak transcription	NHEK	skin
28	chr10:27811000-27823200	Weak transcription	Thymus	Thymus
29	chr10:27812600-27822600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr10:27813200-27822800	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr10:27813400-27820800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:27813400-27823200	Weak transcription	Fetal Intestine Small	intestine
33	chr10:27814000-27822600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr10:27814000-27822800	Weak transcription	GM12878-XiMat	blood
35	chr10:27814000-27823200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr10:27814200-27836000	Weak transcription	Brain Germinal Matrix	brain
37	chr10:27814600-27822800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr10:27815000-27822600	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr10:27815000-27822600	Weak transcription	Duodenum Mucosa	Duodenum
40	chr10:27815000-27831000	Weak transcription	Fetal Heart	heart
41	chr10:27815000-27834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr10:27815200-27821800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr10:27815400-27822200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:27815400-27823200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr10:27815400-27823200	Weak transcription	Pancreas	Pancrea
46	chr10:27815400-27823400	Weak transcription	Ovary	ovary
47	chr10:27815600-27822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:27815600-27823200	Weak transcription	Left Ventricle	heart
49	chr10:27815600-27823200	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr10:27815600-27823200	Weak transcription	NHLF	lung

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