Variant report

Variant	rs250747
Chromosome Location	chr5:76041282-76041283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:76028712..76031262-chr5:76040651..76044472,3	K562	blood:
2	chr5:76039605..76041690-chr5:76046432..76048582,2	K562	blood:
3	chr5:76034540..76037024-chr5:76038792..76041708,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs152778	0.92[ASN][1000 genomes]
rs153306	0.87[ASN][1000 genomes]
rs153310	0.90[ASN][1000 genomes]
rs193943	0.94[ASN][1000 genomes]
rs250716	0.94[ASN][1000 genomes]
rs250717	0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs250719	0.95[ASN][1000 genomes]
rs250720	0.87[ASN][1000 genomes]
rs250723	0.85[ASN][1000 genomes]
rs250730	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs250731	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs250739	0.97[ASN][1000 genomes]
rs250741	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs250742	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs250743	0.87[ASN][1000 genomes]
rs250744	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs250745	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs250746	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs250748	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs250749	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs250750	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs250751	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs250752	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs253072	0.87[ASN][1000 genomes]
rs253073	0.87[ASN][1000 genomes]
rs37250	0.83[ASN][1000 genomes]
rs457606	0.89[ASN][1000 genomes]
rs705402	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs250747	F2R	cis	lung	GTEx
rs250747	F2R	cis	Muscle Skeletal	GTEx
rs250747	F2R	cis	Esophagus Muscularis	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76026400-76042800	Weak transcription	Right Atrium	heart
2	chr5:76030600-76046600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:76035600-76043600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:76035800-76046400	Weak transcription	HepG2	liver
5	chr5:76038800-76041400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr5:76041200-76042000	Enhancers	Fetal Lung	lung
7	chr5:76041200-76042200	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links