Variant report

Variant	rs253073
Chromosome Location	chr5:76024227-76024228
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:76011844..76018485-chr5:76019035..76024574,8	K562	blood:
2	chr5:76023117..76024949-chr5:76027820..76030063,2	K562	blood:
3	chr5:76021774..76024376-chr5:76030614..76032176,2	K562	blood:
4	chr5:76023449..76027739-chr5:76027820..76030075,3	K562	blood:

Variant related genes	Relation type
ENSG00000181104	Chromatin interaction
ENSG00000225407	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs152778	0.83[ASN][1000 genomes]
rs153310	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs193943	0.84[ASN][1000 genomes]
rs250716	0.84[ASN][1000 genomes]
rs250717	0.85[ASN][1000 genomes]
rs250719	0.85[ASN][1000 genomes]
rs250730	0.94[ASN][1000 genomes]
rs250731	0.97[ASN][1000 genomes]
rs250739	0.83[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs250741	0.88[ASN][1000 genomes]
rs250742	0.88[ASN][1000 genomes]
rs250744	0.88[ASN][1000 genomes]
rs250745	0.88[ASN][1000 genomes]
rs250746	0.88[ASN][1000 genomes]
rs250747	0.87[ASN][1000 genomes]
rs250748	0.88[ASN][1000 genomes]
rs250750	0.88[ASN][1000 genomes]
rs250751	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs250752	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs253072	1.00[ASN][1000 genomes]
rs37250	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs705402	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019669	chr5:75836365-76477788	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1035135	chr5:75927027-76092058	Strong transcription Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv882207	chr5:75997213-76027823	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv882208	chr5:75997213-76034355	Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv882209	chr5:76004933-76034355	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs253073	F2R	cis	lung	GTEx
rs253073	F2R	cis	Muscle Skeletal	GTEx

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:76013000-76028400	Weak transcription	Aorta	Aorta
2	chr5:76013000-76032000	Weak transcription	HSMM	muscle
3	chr5:76013000-76033000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:76013800-76028400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:76013800-76030800	Weak transcription	Ovary	ovary
6	chr5:76014000-76028400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:76014400-76024800	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:76014400-76025400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:76014400-76025400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:76017000-76028400	Weak transcription	Spleen	Spleen
11	chr5:76018400-76034400	Weak transcription	Left Ventricle	heart
12	chr5:76018600-76025600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:76020200-76024600	Weak transcription	Duodenum Mucosa	Duodenum
14	chr5:76021000-76025200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr5:76021000-76025200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:76021000-76026400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr5:76021000-76030400	Strong transcription	HUVEC	blood vessel
18	chr5:76021200-76024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr5:76021200-76027000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr5:76021200-76034200	Weak transcription	HepG2	liver
21	chr5:76021400-76025000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:76021400-76025200	Weak transcription	NHDF-Ad	bronchial
23	chr5:76021400-76025400	Weak transcription	K562	blood
24	chr5:76021400-76025400	Weak transcription	Osteobl	bone
25	chr5:76021600-76024400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:76021800-76026000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr5:76022000-76030600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:76022400-76026200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:76022400-76026600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr5:76022400-76027000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:76022600-76024400	ZNF genes & repeats	A549	lung
32	chr5:76022600-76024800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:76022600-76026600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:76022600-76026600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr5:76022800-76026600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:76022800-76026600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
37	chr5:76022800-76027000	ZNF genes & repeats	Fetal Lung	lung
38	chr5:76023000-76024400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr5:76023000-76026600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr5:76023000-76030400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:76023200-76025400	Weak transcription	Fetal Brain Male	brain
42	chr5:76023400-76024600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr5:76023400-76024600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr5:76023400-76025200	Strong transcription	NHLF	lung
45	chr5:76023400-76025400	Weak transcription	NH-A	brain
46	chr5:76023800-76024800	ZNF genes & repeats	Fetal Stomach	stomach
47	chr5:76024000-76024400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
48	chr5:76024000-76024400	ZNF genes & repeats	NHEK	skin
49	chr5:76024000-76024600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
50	chr5:76024000-76026600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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