Variant report

Variant	rs2507843
Chromosome Location	chr11:58488531-58488532
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12294653	0.84[AFR][1000 genomes]
rs2497373	0.83[AMR][1000 genomes]
rs2497378	0.83[AMR][1000 genomes]
rs2497380	0.87[AFR][1000 genomes]
rs2497381	0.87[AFR][1000 genomes]
rs2497382	0.84[AFR][1000 genomes]
rs2497383	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2497384	0.84[AFR][1000 genomes]
rs2497385	0.84[AFR][1000 genomes]
rs2507838	0.84[AFR][1000 genomes]
rs2507839	0.84[AFR][1000 genomes]
rs2507840	0.84[AFR][1000 genomes]
rs2507841	0.87[AFR][1000 genomes]
rs2507844	0.83[AMR][1000 genomes]
rs2509908	0.94[AFR][1000 genomes]
rs2509909	0.87[AFR][1000 genomes]
rs2509911	0.84[AFR][1000 genomes]
rs2509912	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58480000-58493200	Weak transcription	Fetal Kidney	kidney
2	chr11:58481800-58493000	Weak transcription	Adipose Nuclei	Adipose
3	chr11:58484000-58492200	Weak transcription	Fetal Intestine Large	intestine
4	chr11:58488400-58488800	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links