Variant report

Variant	rs2509909
Chromosome Location	chr11:58479084-58479085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10896850	0.91[YRI][hapmap]
rs11824661	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11825879	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11826261	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11826771	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12294653	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17491836	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17492226	0.80[ASN][1000 genomes]
rs17492557	0.80[ASN][1000 genomes]
rs1943283	1.00[JPT][hapmap]
rs2497378	0.96[YRI][hapmap]
rs2497380	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497381	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2497382	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2497383	0.90[AFR][1000 genomes]
rs2497384	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2497385	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2507838	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2507839	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2507840	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2507841	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2507843	0.87[AFR][1000 genomes]
rs2507844	0.91[YRI][hapmap]
rs2509908	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2509911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2509912	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34385852	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34478456	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35339341	1.00[EUR][1000 genomes]
rs4379865	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55711753	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56350730	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57138821	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57536559	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59118909	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7116722	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9666828	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58476800-58481800	Strong transcription	Adipose Nuclei	Adipose
2	chr11:58476800-58485400	Strong transcription	Liver	Liver

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