Variant report
| Variant | rs35339341 |
|---|---|
| Chromosome Location | chr11:58508863-58508864 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000110031 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11824661 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11825879 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11826261 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11826771 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12294653 | 1.00[EUR][1000 genomes] |
| rs12803463 | 1.00[AFR][1000 genomes] |
| rs17491836 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17492226 | 1.00[AFR][1000 genomes] |
| rs2497380 | 1.00[EUR][1000 genomes] |
| rs2497381 | 1.00[EUR][1000 genomes] |
| rs2497382 | 1.00[EUR][1000 genomes] |
| rs2497384 | 1.00[EUR][1000 genomes] |
| rs2497385 | 1.00[EUR][1000 genomes] |
| rs2507838 | 1.00[EUR][1000 genomes] |
| rs2507839 | 1.00[EUR][1000 genomes] |
| rs2507840 | 1.00[EUR][1000 genomes] |
| rs2507841 | 1.00[EUR][1000 genomes] |
| rs2509908 | 1.00[EUR][1000 genomes] |
| rs2509909 | 1.00[EUR][1000 genomes] |
| rs2509911 | 1.00[EUR][1000 genomes] |
| rs2509912 | 1.00[EUR][1000 genomes] |
| rs34193069 | 1.00[AFR][1000 genomes] |
| rs34385852 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs34478456 | 1.00[EUR][1000 genomes] |
| rs35180622 | 1.00[AFR][1000 genomes] |
| rs4379865 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55711753 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56350730 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57138821 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57536559 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59118909 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7116722 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9666828 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832168 | chr11:58394060-58564651 | Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv1050013 | chr11:58394598-59221090 | Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 67 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
