Variant report

Variant	rs4379865
Chromosome Location	chr11:58542120-58542121
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58539643..58542298-chr11:58554397..58556445,2	K562	blood:
2	chr11:58534531..58540413-chr11:58541939..58546893,7	K562	blood:
3	chr11:58537258..58541361-chr11:58541719..58544001,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11824661	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825879	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826261	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826771	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294653	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17491836	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492226	0.90[ASN][1000 genomes]
rs17492557	0.90[ASN][1000 genomes]
rs1943259	0.87[AFR][1000 genomes]
rs1943283	0.81[ASN][1000 genomes]
rs2156342	0.87[AFR][1000 genomes]
rs2156347	0.87[AFR][1000 genomes]
rs2187265	0.87[AFR][1000 genomes]
rs2497380	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497381	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497382	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2497384	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2497385	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507838	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507839	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507840	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507841	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2509908	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2509909	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2509911	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2509912	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34385852	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478456	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35339341	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55711753	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56350730	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57138821	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57536559	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59118909	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116722	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs870813	0.87[AFR][1000 genomes]
rs9666828	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
4	nsv1048605	chr11:58534660-58672438	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58539000-58542600	Enhancers	Fetal Intestine Small	intestine
2	chr11:58539600-58543000	Enhancers	Fetal Intestine Large	intestine
3	chr11:58541200-58542200	Flanking Active TSS	K562	blood

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