Variant report

Variant	rs1943283
Chromosome Location	chr11:58613810-58613811
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11824661	0.81[ASN][1000 genomes]
rs11825879	0.81[ASN][1000 genomes]
rs11826261	0.81[ASN][1000 genomes]
rs11826771	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs17491836	0.81[ASN][1000 genomes]
rs17492226	0.91[ASN][1000 genomes]
rs17492557	0.91[ASN][1000 genomes]
rs1943284	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2497380	1.00[JPT][hapmap]
rs2507841	1.00[JPT][hapmap]
rs2509909	1.00[JPT][hapmap]
rs2509911	1.00[JPT][hapmap]
rs34385852	0.81[ASN][1000 genomes]
rs34478456	0.81[ASN][1000 genomes]
rs4379865	0.81[ASN][1000 genomes]
rs55711753	0.81[ASN][1000 genomes]
rs56350730	0.81[ASN][1000 genomes]
rs57138821	0.81[ASN][1000 genomes]
rs57536559	0.81[ASN][1000 genomes]
rs59118909	0.81[ASN][1000 genomes]
rs7116722	0.81[ASN][1000 genomes]
rs72913216	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv948365	chr11:58515163-59156405	Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1048605	chr11:58534660-58672438	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1045858	chr11:58547772-58674568	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1052173	chr11:58553516-58678496	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv523481	chr11:58553771-58632368	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv525355	chr11:58553771-58632368	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1827788	chr11:58595883-58636405	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58610800-58614200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr11:58610800-58614600	Enhancers	Primary hematopoietic stem cells	blood
3	chr11:58613000-58618000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:58613200-58614200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr11:58613800-58614000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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