Variant report

Variant	rs59118909
Chromosome Location	chr11:58514203-58514204
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:58512569..58514471-chr11:58539113..58540674,2	K562	blood:
2	chr11:58345133..58347436-chr11:58512907..58514967,3	K562	blood:
3	chr11:58507981..58510600-chr11:58513137..58516099,3	K562	blood:
4	chr11:58513430..58516648-chr11:58544097..58546491,4	K562	blood:
5	chr11:58512630..58515481-chr11:68881211..68883922,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110031	Chromatin interaction
ENSG00000255073	Chromatin interaction
ENSG00000186660	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11824661	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825879	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826261	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11826771	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12294653	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17491836	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17492226	0.90[ASN][1000 genomes]
rs17492557	0.90[ASN][1000 genomes]
rs1943283	0.81[ASN][1000 genomes]
rs2497380	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497381	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2497382	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2497384	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2497385	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507838	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507839	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507840	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2507841	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2509908	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2509909	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2509911	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2509912	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34385852	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34478456	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35339341	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4379865	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55711753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56350730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57138821	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57536559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58516351	0.85[AFR][1000 genomes]
rs7116722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9666828	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58513800-58514600	Enhancers	K562	blood

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