Variant report

Variant	rs58516351
Chromosome Location	chr11:58500626-58500627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs17152835	1.00[AMR][1000 genomes]
rs34478456	0.83[AFR][1000 genomes]
rs55711753	0.85[AFR][1000 genomes]
rs56350730	0.85[AFR][1000 genomes]
rs57138821	0.97[AFR][1000 genomes]
rs57536559	0.85[AFR][1000 genomes]
rs57987309	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59118909	0.85[AFR][1000 genomes]
rs59373194	1.00[AMR][1000 genomes]
rs59956190	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60207372	1.00[AMR][1000 genomes]
rs7116722	0.85[AFR][1000 genomes]
rs9666828	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832168	chr11:58394060-58564651	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1050013	chr11:58394598-59221090	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58499400-58501000	Enhancers	Fetal Intestine Large	intestine
2	chr11:58500000-58503400	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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