Variant report

Variant	rs2508028
Chromosome Location	chr6:30209515-30209516
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10947055	1.00[ASN][1000 genomes]
rs12204708	1.00[ASN][1000 genomes]
rs1579220	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2158287	0.80[EUR][1000 genomes]
rs2516698	0.85[EUR][1000 genomes]
rs61758102	1.00[ASN][1000 genomes]
rs6906364	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911349	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924952	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9468691	1.00[ASN][1000 genomes]
rs9501314	1.00[ASN][1000 genomes]
rs9501315	1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2508028	HCG18	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30205600-30213000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:30208400-30211600	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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