Variant report

Variant	rs9501315
Chromosome Location	chr6:30084587-30084588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:30084560-30084710	AoAF	blood vessel:	n/a	n/a
2	CTCF	chr6:30084500-30084650	MCF-7	breast:	n/a	n/a
3	CTCF	chr6:30084460-30084610	GM12873	blood:	n/a	n/a
4	CTCF	chr6:30084460-30084610	HPAF	blood vessel:	n/a	n/a
5	CTCF	chr6:30084540-30084690	HRE	kidney:	n/a	n/a
6	CTCF	chr6:30084500-30084650	HRE	kidney:	n/a	n/a
7	CTCF	chr6:30084560-30084710	HVMF	connective:	n/a	n/a
8	CTCF	chr6:30084500-30084650	GM12874	blood:	n/a	n/a
9	CTCF	chr6:30084480-30084630	GM12878	blood:	n/a	n/a
10	CTCF	chr6:30084440-30084590	HCPEpiC	choroid plexus:	n/a	n/a
11	CTCF	chr6:30084500-30084650	AG04450	lung:	n/a	n/a
12	CTCF	chr6:30084440-30084590	HAc	cerebellar:	n/a	n/a
13	CTCF	chr6:30084580-30084730	HCT-116	colon:	n/a	n/a
14	CTCF	chr6:30084540-30084690	HRPEpiC	eye:	n/a	n/a
15	CTCF	chr6:30084580-30084730	SAEC	small airway:	n/a	n/a
16	CTCF	chr6:30084520-30084670	HMEC	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:30083851..30086480-chr6:30123012..30125789,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10947055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204708	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12212092	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2508028	1.00[ASN][1000 genomes]
rs6924952	1.00[ASN][1000 genomes]
rs9468691	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9468693	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9501314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30082000-30089400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:30082200-30086400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr6:30082200-30087400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:30082400-30087200	Weak transcription	Hela-S3	cervix
5	chr6:30082400-30091000	Weak transcription	HepG2	liver
6	chr6:30082600-30086400	Weak transcription	Stomach Mucosa	stomach
7	chr6:30082600-30086400	Weak transcription	A549	lung
8	chr6:30082800-30086200	Weak transcription	Fetal Intestine Large	intestine
9	chr6:30082800-30086200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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