Variant report

Variant	rs2508383
Chromosome Location	chr11:102585696-102585697
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11225392	0.83[ASN][1000 genomes]
rs12099177	0.94[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1276269	0.83[JPT][hapmap]
rs17099411	0.84[JPT][hapmap]
rs17099451	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs17099452	0.89[CHB][hapmap];0.84[JPT][hapmap]
rs1892885	0.85[ASN][1000 genomes]
rs2012390	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3740936	0.85[ASN][1000 genomes]
rs3740938	0.89[CHB][hapmap];0.89[JPT][hapmap]
rs3758860	0.89[CHB][hapmap];0.83[JPT][hapmap]
rs4564300	0.89[ASN][1000 genomes]
rs4754049	0.85[ASN][1000 genomes]
rs4754869	0.83[JPT][hapmap]
rs4754870	0.83[CHB][hapmap];0.89[JPT][hapmap]
rs4754871	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102583600-102586600	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr11:102583800-102586600	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr11:102585000-102586400	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr11:102585600-102586000	Enhancers	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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