Variant report

Variant	rs17099452
Chromosome Location	chr11:102596774-102596775
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11225392	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12099177	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1276269	0.89[JPT][hapmap]
rs17093633	0.92[AMR][1000 genomes]
rs17099411	0.85[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes]
rs17099419	1.00[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes]
rs17099436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1892885	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1940052	0.92[AMR][1000 genomes]
rs2012390	0.89[ASN][1000 genomes]
rs34433762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35308160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3740936	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3740938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4376870	0.89[AMR][1000 genomes]
rs4498962	0.92[AMR][1000 genomes]
rs4564300	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4754049	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754866	0.92[AMR][1000 genomes]
rs4754867	0.92[AMR][1000 genomes]
rs4754869	1.00[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes]
rs4754870	0.85[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes]
rs4754871	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4754872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754876	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58406046	0.92[AMR][1000 genomes]
rs60059188	0.92[AMR][1000 genomes]
rs60964518	0.92[AMR][1000 genomes]
rs72973547	0.92[AMR][1000 genomes]
rs72973559	0.92[AMR][1000 genomes]
rs72973562	0.92[AMR][1000 genomes]
rs72973563	0.92[AMR][1000 genomes]
rs72975539	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975567	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102593600-102598800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:102594600-102597600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr11:102594600-102598200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr11:102595400-102596800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:102595400-102597200	Enhancers	HMEC	breast
6	chr11:102595600-102596800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr11:102595600-102596800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:102595800-102598200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:102596200-102597200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr11:102596400-102597200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr11:102596400-102601000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:102596600-102598200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:102596600-102598200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:102596600-102598200	Weak transcription	NHEK	skin

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