Variant report

Variant	rs4754876
Chromosome Location	chr11:102603448-102603449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11225392	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12099177	0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1276269	0.88[JPT][hapmap]
rs17093633	0.86[AMR][1000 genomes]
rs17099411	0.94[JPT][hapmap];0.86[AMR][1000 genomes]
rs17099419	0.83[JPT][hapmap];0.82[MEX][hapmap];0.86[AMR][1000 genomes]
rs17099436	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17099451	0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17099452	0.88[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1892885	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1940052	0.86[AMR][1000 genomes]
rs34433762	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35308160	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3740936	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3740938	0.89[CHB][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3758860	0.89[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4376870	0.84[AMR][1000 genomes]
rs4498962	0.86[AMR][1000 genomes]
rs4564300	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4754049	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4754866	0.86[AMR][1000 genomes]
rs4754867	0.86[AMR][1000 genomes]
rs4754869	0.88[JPT][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes]
rs4754870	0.94[JPT][hapmap]
rs4754871	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4754872	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4754874	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58406046	0.86[AMR][1000 genomes]
rs60059188	0.86[AMR][1000 genomes]
rs60964518	0.86[AMR][1000 genomes]
rs72973547	0.86[AMR][1000 genomes]
rs72973559	0.86[AMR][1000 genomes]
rs72973562	0.86[AMR][1000 genomes]
rs72973563	0.86[AMR][1000 genomes]
rs72975539	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72975567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102602200-102606600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:102603200-102604000	Enhancers	Primary neutrophils fromperipheralblood	blood

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