Variant report

Variant	rs60964518
Chromosome Location	chr11:102542963-102542964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11225392	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12099177	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1276266	0.97[ASN][1000 genomes]
rs1276269	0.95[ASN][1000 genomes]
rs12785344	0.92[ASN][1000 genomes]
rs1296221	0.97[ASN][1000 genomes]
rs17093633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17099334	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17099389	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17099411	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17099419	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17099436	0.92[AMR][1000 genomes]
rs17099451	0.92[AMR][1000 genomes]
rs17099452	0.92[AMR][1000 genomes]
rs1892885	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1940052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34433762	0.92[AMR][1000 genomes]
rs35308160	0.92[AMR][1000 genomes]
rs3740936	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3740938	0.92[AMR][1000 genomes]
rs3758860	0.92[AMR][1000 genomes]
rs4376870	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4498962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4564300	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754049	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754864	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4754866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754869	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4754870	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754871	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754872	0.92[AMR][1000 genomes]
rs4754874	0.92[AMR][1000 genomes]
rs4754876	0.86[AMR][1000 genomes]
rs58406046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60059188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973542	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72973547	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973559	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72973563	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72975539	0.92[AMR][1000 genomes]
rs72975567	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102525000-102546400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:102542600-102543400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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