Variant report

Variant	rs17099334
Chromosome Location	chr11:102525065-102525066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10502002	1.00[AFR][1000 genomes]
rs12099177	0.82[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs1276269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17093633	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17099319	0.96[ASN][1000 genomes]
rs17099411	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17099419	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17099451	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs17099452	0.89[JPT][hapmap]
rs1940052	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35877292	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3740938	0.82[CEU][hapmap];0.94[JPT][hapmap]
rs3758860	0.89[JPT][hapmap]
rs4376870	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4498962	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754864	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754866	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754867	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754869	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4754870	0.85[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]
rs56911610	0.97[ASN][1000 genomes]
rs58406046	0.83[AMR][1000 genomes]
rs60059188	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60964518	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72971693	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72971696	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72971702	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72973505	1.00[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs72973542	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72973547	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72973559	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72973562	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72973563	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3423283	chr11:102522642-102526940	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3376965	chr11:102523592-102526090	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102525000-102527400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:102525000-102546400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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