Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12099177	0.83[CHB][hapmap];0.94[JPT][hapmap]
rs1276269	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17099334	0.96[ASN][1000 genomes]
rs17099411	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17099419	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs17099451	0.94[JPT][hapmap]
rs17099452	0.89[JPT][hapmap]
rs35877292	0.82[ASN][1000 genomes]
rs3740938	0.94[JPT][hapmap]
rs3758860	0.89[JPT][hapmap]
rs4754864	0.86[ASN][1000 genomes]
rs4754869	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4754870	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs56089246	0.81[AFR][1000 genomes]
rs56911610	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57443817	0.81[AFR][1000 genomes]
rs58313885	0.81[AFR][1000 genomes]
rs72971693	0.81[ASN][1000 genomes]
rs72971696	0.83[ASN][1000 genomes]
rs72971702	0.86[ASN][1000 genomes]
rs72973505	0.90[ASN][1000 genomes]
rs72973542	0.90[ASN][1000 genomes]
rs73584639	0.81[AFR][1000 genomes]
rs73584645	0.81[AFR][1000 genomes]
rs73584666	0.81[AFR][1000 genomes]
rs73584688	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3423283	chr11:102522642-102526940	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3376965	chr11:102523592-102526090	Enhancers ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102523600-102524800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:102524000-102524600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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