Variant report

Variant	rs17099389
Chromosome Location	chr11:102555549-102555550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11821755	0.90[AFR][1000 genomes]
rs12099177	0.88[CHB][hapmap];0.82[CHD][hapmap];0.94[JPT][hapmap]
rs1276266	0.94[ASN][1000 genomes]
rs1276269	0.94[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12785344	0.96[ASN][1000 genomes]
rs1296221	0.94[ASN][1000 genomes]
rs17093633	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099392	0.90[AFR][1000 genomes]
rs17099411	0.94[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099419	0.94[CHB][hapmap];0.94[CHD][hapmap];0.94[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17099451	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs17099452	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs1940052	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740938	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs3758860	0.81[CHB][hapmap];0.94[JPT][hapmap]
rs4121468	0.84[LWK][hapmap]
rs4376870	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4498962	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4754866	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4754867	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4754869	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4754870	0.88[CHB][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58406046	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60059188	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60964518	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72973547	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72973559	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72973562	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72973563	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832252	chr11:102445479-102627879	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1037454	chr11:102487521-102601233	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv541156	chr11:102487521-102601233	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102548600-102556000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:102550800-102555600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:102552600-102556200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr11:102552600-102556200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:102554400-102556000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr11:102555200-102557200	Enhancers	HMEC	breast
7	chr11:102555400-102556600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:102555400-102557200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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