Variant report

Variant	rs2510869
Chromosome Location	chr11:58241580-58241581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1047979	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10792167	0.81[AFR][1000 genomes]
rs10792176	0.83[AMR][1000 genomes]
rs10896768	0.81[AFR][1000 genomes]
rs11229497	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229499	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229518	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11560952	0.80[AMR][1000 genomes]
rs11603190	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12786074	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12790816	0.81[AMR][1000 genomes]
rs1815895	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1938596	0.83[AMR][1000 genomes]
rs1944050	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1944052	0.83[AMR][1000 genomes]
rs1944054	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1954694	0.83[AMR][1000 genomes]
rs2003230	0.82[AFR][1000 genomes]
rs2154630	0.83[AMR][1000 genomes]
rs2245938	0.83[AMR][1000 genomes]
rs2507758	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2507763	0.83[AMR][1000 genomes]
rs2509915	0.83[AMR][1000 genomes]
rs2509916	0.85[AMR][1000 genomes]
rs2509920	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2509928	0.83[AMR][1000 genomes]
rs2510552	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2510557	0.85[AMR][1000 genomes]
rs2510559	0.82[AMR][1000 genomes]
rs2510866	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2515343	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2515346	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2515347	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2515352	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2515353	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2515354	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2515357	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2515359	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2515362	0.82[AMR][1000 genomes]
rs2515363	0.83[AMR][1000 genomes]
rs2515364	0.83[AMR][1000 genomes]
rs2515366	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2515368	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3133439	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3133440	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4280011	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4287352	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4581466	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58899483	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6591483	0.82[AMR][1000 genomes]
rs7109553	0.81[AMR][1000 genomes]
rs7113479	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7115326	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7116652	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7127513	0.83[AMR][1000 genomes]
rs7128785	0.81[AMR][1000 genomes]
rs7350490	0.83[AMR][1000 genomes]
rs7940789	0.83[AMR][1000 genomes]
rs7941135	0.83[AMR][1000 genomes]
rs7942923	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7952094	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs948560	0.83[AMR][1000 genomes]
rs9919662	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv517849	chr11:58129053-58264181	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv1042491	chr11:58134936-58263639	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58239800-58243600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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