Variant report

Variant	rs3133439
Chromosome Location	chr11:58268743-58268744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:143)

rs_ID	r²[population]
rs1009171	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1009172	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1009173	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1047979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10792172	1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10792173	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10792174	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10792175	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10792176	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10792177	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10792178	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10792179	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896791	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896792	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10896798	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10896799	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896800	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896801	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896802	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896803	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896804	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896805	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896806	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896807	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896808	0.84[ASN][1000 genomes]
rs10896809	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10896810	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs10896811	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs10896812	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11229497	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11229499	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11229518	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11229527	0.89[ASN][1000 genomes]
rs11229551	0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11229553	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11229554	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11229556	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11229557	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11229558	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11229559	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11229560	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11229561	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11229563	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11229565	0.83[ASN][1000 genomes]
rs11229568	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11229569	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11522717	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11560952	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11603190	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11604156	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11605641	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11607534	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12361824	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12362218	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12419118	1.00[YRI][hapmap]
rs12785991	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12786074	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12790816	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17490208	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17490375	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1815895	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1938596	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1938599	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938600	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938602	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938604	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938605	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938606	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938607	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938608	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938610	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938611	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1938612	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1941966	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1941967	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1941968	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1944050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1944052	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1944054	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1954694	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1954871	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2154630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2154631	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2154632	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2245938	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2276151	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2276301	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2507758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2507763	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509915	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509916	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509919	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509924	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2509928	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2510552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2510557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2510559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2510866	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2510869	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2515343	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2515346	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2515352	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515353	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515354	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2515357	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2515359	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2515362	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515363	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515364	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2515366	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2515368	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3133440	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4280011	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4287352	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4319530	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4581466	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58899483	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59104317	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61889553	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6591483	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7109553	0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7113479	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7115326	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7116652	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7117845	0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[YRI][hapmap]
rs7127513	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7128785	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7350490	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7926718	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7940789	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7941135	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7942923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7944257	0.90[CHB][hapmap];0.85[JPT][hapmap]
rs7948312	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7952094	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs948560	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs948561	0.81[ASN][1000 genomes]
rs956658	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9888176	0.89[ASN][1000 genomes]
rs9919662	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv976518	chr11:58247628-58271109	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58262600-58274800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:58264400-58270600	Weak transcription	GM12878-XiMat	blood
3	chr11:58266200-58270800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:58266800-58274800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:58266800-58278600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr11:58266800-58278800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:58267000-58271000	Weak transcription	Primary T cells from cord blood	blood
8	chr11:58267000-58279600	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr11:58268600-58269000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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