Variant report

Variant	rs2510957
Chromosome Location	chr11:94371320-94371321
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PIWIL4-1	chr11:94371179-94371519	XLOC_009252
2	lnc-PIWIL4-1	chr11:94370957-94371519	XLOC_009252

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4127392	1.00[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs570186	0.84[CEU][hapmap]
rs572309	0.80[CEU][hapmap]
rs606227	0.81[CEU][hapmap]
rs621995	0.81[CEU][hapmap]
rs622022	0.81[CEU][hapmap]
rs635232	0.81[CEU][hapmap]
rs649944	0.80[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2510957	SNORA40	cis	cerebellum	SCAN
rs2510957	SNORD5	cis	cerebellum	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94363800-94371800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:94368000-94374200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr11:94368400-94371600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:94368400-94374000	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:94368400-94374000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:94368600-94371800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:94369200-94371800	Enhancers	K562	blood
8	chr11:94369600-94371600	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:94370000-94371400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:94370000-94371400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:94370000-94371600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:94370000-94374000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:94370600-94373800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr11:94370600-94374600	Enhancers	Placenta	Placenta
15	chr11:94370800-94371800	Enhancers	Adipose Nuclei	Adipose
16	chr11:94370800-94371800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr11:94370800-94373200	Enhancers	Placenta Amnion	Placenta Amnion
18	chr11:94370800-94373200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr11:94371000-94371400	Weak transcription	Brain Substantia Nigra	brain
20	chr11:94371000-94371600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:94371000-94371800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr11:94371000-94371800	Enhancers	Fetal Kidney	kidney
23	chr11:94371000-94372000	Enhancers	Brain Cingulate Gyrus	brain
24	chr11:94371000-94372800	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr11:94371000-94372800	Enhancers	Psoas Muscle	Psoas
26	chr11:94371000-94372800	Enhancers	HSMM	muscle
27	chr11:94371200-94371400	Strong transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:94371200-94371400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:94371200-94371400	Enhancers	Primary B cells from cord blood	blood
30	chr11:94371200-94371600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr11:94371200-94371600	Enhancers	HSMMtube	muscle
32	chr11:94371200-94371600	Enhancers	Osteobl	bone
33	chr11:94371200-94372000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr11:94371200-94372000	Enhancers	NHLF	lung
35	chr11:94371200-94372200	Enhancers	ES-I3 Cell Line	embryonic stem cell
36	chr11:94371200-94372200	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr11:94371200-94372400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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