Variant report

Variant	rs2513012
Chromosome Location	chr11:86440680-86440681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86438833..86441351-chr11:86445320..86447426,4	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1075702	0.81[ASN][1000 genomes]
rs2433406	0.88[ASN][1000 genomes]
rs2433407	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2433408	0.86[ASN][1000 genomes]
rs2433409	0.94[ASN][1000 genomes]
rs2433410	0.93[ASN][1000 genomes]
rs2433411	0.98[ASN][1000 genomes]
rs2433424	0.94[ASN][1000 genomes]
rs2433425	0.92[ASN][1000 genomes]
rs2433426	0.93[ASN][1000 genomes]
rs2433427	0.90[ASN][1000 genomes]
rs2433428	0.92[ASN][1000 genomes]
rs2433429	0.92[ASN][1000 genomes]
rs2433430	0.82[ASN][1000 genomes]
rs2433431	0.93[ASN][1000 genomes]
rs2433432	0.92[ASN][1000 genomes]
rs2512996	0.91[ASN][1000 genomes]
rs2512997	0.91[ASN][1000 genomes]
rs2512998	0.88[ASN][1000 genomes]
rs2512999	0.93[ASN][1000 genomes]
rs2513000	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2513001	0.91[ASN][1000 genomes]
rs2513003	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2513006	0.97[ASN][1000 genomes]
rs2513008	0.94[ASN][1000 genomes]
rs2513009	0.96[ASN][1000 genomes]
rs2513010	0.96[ASN][1000 genomes]
rs2513011	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3096711	0.95[ASN][1000 genomes]
rs3096714	0.90[ASN][1000 genomes]
rs4586194	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7108176	0.91[ASN][1000 genomes]
rs7108300	0.90[ASN][1000 genomes]
rs7115320	0.82[ASN][1000 genomes]
rs7124794	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7129902	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1049157	chr11:86409059-86504155	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv521505	chr11:86438115-86515072	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86407000-86451600	Weak transcription	Left Ventricle	heart
2	chr11:86424200-86449800	Weak transcription	Pancreas	Pancrea
3	chr11:86434800-86446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:86437600-86446000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:86437800-86444200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:86437800-86446400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:86438000-86446200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:86438400-86446400	Weak transcription	NHEK	skin
9	chr11:86439600-86446000	Weak transcription	HMEC	breast
10	chr11:86439800-86444200	Weak transcription	HSMM	muscle
11	chr11:86439800-86446400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:86440000-86444400	Weak transcription	Hela-S3	cervix
13	chr11:86440000-86446600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:86440400-86442200	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links